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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ovx 4MR Matrix metalloproteinase-9 3.4.24.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ovx 4MRMatrix metalloproteinase-9 3.4.24.35 0.970
1g4k HQQStromelysin-1 3.4.24.17 0.796
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.722
1zs0 EINNeutrophil collagenase 3.4.24.34 0.710
1you PFDCollagenase 3 3.4.24 0.700
4g9l NGHStromelysin-1 3.4.24.17 0.699
3kry 3KRCollagenase 3 3.4.24 0.697
4ja1 NGHStromelysin-1 3.4.24.17 0.695
1g49 111Stromelysin-1 3.4.24.17 0.682
1hy7 MBSStromelysin-1 3.4.24.17 0.680
2ow2 8MRMatrix metalloproteinase-9 3.4.24.35 0.678
1d8m BBHStromelysin-1 3.4.24.17 0.674
4dpe NGHStromelysin-1 3.4.24.17 0.665
1bzs BSINeutrophil collagenase 3.4.24.34 0.662
1d5j MM3Stromelysin-1 3.4.24.17 0.661
1b8y IN7Stromelysin-1 3.4.24.17 0.654