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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ovh AS0 Progesterone receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ovh AS0Progesterone receptor / 1.194
2ovm AS0Progesterone receptor / 1.088
2w8y 486Progesterone receptor / 0.907
3vhu SNLMineralocorticoid receptor / 0.729
2ab2 SNLMineralocorticoid receptor / 0.723
2abi 1CAMineralocorticoid receptor / 0.718
2aax PDNMineralocorticoid receptor / 0.712
2aa7 1CAMineralocorticoid receptor / 0.711
2oax SNLMineralocorticoid receptor / 0.693
2aa2 AS4Mineralocorticoid receptor / 0.687
4a2j AS0Progesterone receptor / 0.686
1y9r 1CAMineralocorticoid receptor / 0.664
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.664
4apu A2KProgesterone receptor / 0.663
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.661
4e5f 0N7Polymerase acidic protein / 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5l DBHPolymerase acidic protein / 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
5dx3 ESTEstrogen receptor / 0.658
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.657
1nhz 486Glucocorticoid receptor / 0.655
2w8y NDRProgesterone receptor / 0.654
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.654