Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2os3 BB2 Peptide deformylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2os3 BB2Peptide deformylase / 1.018
2os1 BB2Peptide deformylase / 0.887
2okl BB2Peptide deformylase 2 / 0.843
1lru BB2Peptide deformylase 3.5.1.88 0.819
1lqy BB2Peptide deformylase 2 3.5.1.88 0.813
1g2a BB2Peptide deformylase 3.5.1.88 0.789
4e9b BB2Peptide deformylase / 0.770
3pn4 BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.767
3m6p BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.766
3uwb BB2RIIA-RIIB membrane-associated protein / 0.765
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.736
3u04 BB2Peptide deformylase / 0.732
2aia SB8Peptide deformylase / 0.725
1ws1 BB2Peptide deformylase 1 / 0.720
3g5k BB2Peptide deformylase, mitochondrial 3.5.1.88 0.718
1lry BB2Peptide deformylase / 0.717
1ix1 BB2Peptide deformylase / 0.705
1g27 BB1Peptide deformylase 3.5.1.88 0.702
2ai7 SB7Peptide deformylase / 0.700
3m6r BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.691
3m6q BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.677
3sw8 5LIPeptide deformylase / 0.668