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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2opm NI9 Farnesyl pyrophosphate synthase 2.5.1.10

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2opm NI9Farnesyl pyrophosphate synthase 2.5.1.10 1.085
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.850
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.725
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.714
3egt 722Farnesyl pyrophosphate synthase / 0.710
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.707
3krf DSTGeranyl diphosphate synthase large subunit / 0.703
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.701
3icz PB6Farnesyl pyrophosphate synthase / 0.695
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 0.688
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.685
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.680
4dwb 0M7Farnesyl pyrophosphate synthase / 0.679
2e8w IPEGeranylgeranyl pyrophosphate synthase / 0.676
2z52 H23Geranylgeranyl pyrophosphate synthase / 0.676
2e91 ZOLGeranylgeranyl pyrophosphate synthase / 0.670
4oi4 ATPmRNA cleavage and polyadenylation factor CLP1 / 0.663
2o1o RISPutative farnesyl pyrophosphate synthase / 0.660
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.655
3of4 FMNNitroreductase / 0.654
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652