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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2op0 7PC Enoyl-ACP reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2op0 7PCEnoyl-ACP reductase / 1.022
2ol4 JPNEnoyl-ACP reductase / 0.791
2op1 8PCEnoyl-ACP reductase / 0.766
3am3 TCLEnoyl-ACP reductase / 0.738
2o2s TCLEnoyl-acyl carrier reductase / 0.726
3fnf JPMEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.706
1nhg TCLEnoyl-ACP reductase / 0.678
3am5 TCLEnoyl-ACP reductase / 0.674
3fnh JPJEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.660