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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oo5 TXD NAD(P) transhydrogenase subunit alpha part 1 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oo5 TXDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 1.132
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.823
1u2g APRNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.787
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.773
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.754
1u2d NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.754
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.746
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.739
1x15 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.708
1l7e NAINAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.706
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.700
1hzz NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.679
3h5n ATPMccB protein / 0.672
1la2 NADInositol-3-phosphate synthase 5.5.1.4 0.670
3qvs NADMyo-inositol-1-phosphate synthase (Ino1) / 0.664
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.660
3wv7 ADPHmd co-occurring protein HcgE / 0.652
4yuz S4MSpermidine synthase, putative / 0.651