Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ol0 DUD DUTP pyrophosphatase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ol0 DUDDUTP pyrophosphatase / 1.024
2oke DUPDUTP pyrophosphatase / 0.811
4gv8 DUPDUTPase / 0.776
2we3 DUTDeoxyuridine 5'-triphosphate nucleotidohydrolase / 0.729
1snf UMPDeoxyuridine 5'-triphosphate nucleotidohydrolase 3.6.1.23 0.723
4wrk DUPDUTPase / 0.701
2v9x DUTdCTP deaminase / 0.696
4a6a TTPdCTP deaminase 3.5.4.13 0.692
2j4q TTPdCTP deaminase / 0.668
2hxd DUPdCTP deaminase, dUMP-forming 3.5.4.30 0.667
2gna GDUUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.665
1xs4 DCPdCTP deaminase / 0.664
2qxx TTPdCTP deaminase 3.5.4.13 0.664
4xjc TTPdCTP deaminase / 0.663