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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oke DUP DUTP pyrophosphatase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oke DUPDUTP pyrophosphatase / 0.934
2ol0 DUDDUTP pyrophosphatase / 0.811
3arn MSJDeoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial 3.6.1.23 0.692
4gv8 DUPDUTPase / 0.689
2qxx TTPdCTP deaminase 3.5.4.13 0.684
3t70 DU4Deoxyuridine 5'-triphosphate nucleotidohydrolase / 0.675
3t64 DU3Deoxyuridine 5'-triphosphate nucleotidohydrolase / 0.664
4a6a TTPdCTP deaminase 3.5.4.13 0.660
2y1t DUDSPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS 3.6.1.23 0.659
1snf UMPDeoxyuridine 5'-triphosphate nucleotidohydrolase 3.6.1.23 0.653
4wrk DUPDUTPase / 0.652