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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ok7 A2P Ferredoxin--NADP reductase, apicoplast

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ok7 A2PFerredoxin--NADP reductase, apicoplast / 1.030
4yaf 2AMNADPH--cytochrome P450 reductase / 0.719
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.704
4yaw 2AMNADPH--cytochrome P450 reductase / 0.676
1ja0 NAPNADPH--cytochrome P450 reductase / 0.674
3qe2 NAPNADPH--cytochrome P450 reductase / 0.672
3qfs NAPNADPH--cytochrome P450 reductase / 0.670
3qft NAPNADPH--cytochrome P450 reductase / 0.670
3qfr NAPNADPH--cytochrome P450 reductase / 0.659
1vhz APRADP compounds hydrolase NudE 3.6.1 0.654
1amo NAPNADPH--cytochrome P450 reductase / 0.651
4yal 2AMNADPH--cytochrome P450 reductase / 0.651