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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oji 33A Mitogen-activated protein kinase 1 2.7.11.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oji 33AMitogen-activated protein kinase 1 2.7.11.24 0.914
2ojj 82AMitogen-activated protein kinase 1 2.7.11.24 0.805
4fv2 EK5Mitogen-activated protein kinase 1 2.7.11.24 0.803
4fv1 EK4Mitogen-activated protein kinase 1 2.7.11.24 0.775
4g6o E28Mitogen-activated protein kinase 1 2.7.11.24 0.775
4fv3 EK6Mitogen-activated protein kinase 1 2.7.11.24 0.760
2ojg 19AMitogen-activated protein kinase 1 2.7.11.24 0.734
2uw5 GVNcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.684