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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ohi FMN Type A flavoprotein FprA 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ohi FMNType A flavoprotein FprA 1 1.217
2ohj FMNType A flavoprotein FprA 1 1.043
1ych FMNNitric oxide reductase 1 0.950
1ycg FMNNitric oxide reductase 1 0.934
2ohh FMNType A flavoprotein FprA 1 0.933
1ycf FMNNitric oxide reductase 1 0.915
2q9u FMNA-type flavoprotein / 0.848
1azl FMNFlavodoxin / 0.762
3f6s FMNFlavodoxin / 0.755
2fcr FMNFlavodoxin / 0.750
2bf4 FMNNADPH--cytochrome P450 reductase / 0.748
1akr FMNFlavodoxin / 0.741
2fx2 FMNFlavodoxin / 0.736
1j8q FMNFlavodoxin / 0.733
1wsb FMNFlavodoxin / 0.732
1xyv FMNFlavodoxin / 0.728
3n3b FMNProtein NrdI / 0.725
4y7c FMNNADPH--cytochrome P450 reductase / 0.722
4bmp FMNProtein NrdI / 0.719
3rpe FADPutative modulator of drug activity / 0.718
4bmo FMNProtein NrdI / 0.718
1ahn FMNFlavodoxin 1 / 0.717
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.715
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.715
3klb FMNUncharacterized protein / 0.714
2v5u FMNFlavodoxin / 0.713
4j8p FMNFlavodoxin / 0.711
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.710
3eo8 FMNPutative nitroreductase / 0.709
3esz FMNFlavodoxin / 0.708
1akw FMNFlavodoxin / 0.707
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.705
3qe2 FMNNADPH--cytochrome P450 reductase / 0.704
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.703
2v5v FMNFlavodoxin / 0.702
3esy FMNFlavodoxin / 0.702
3kap FMNFlavodoxin / 0.701
1c7f FMNFlavodoxin / 0.700
3in6 FMNUncharacterized protein / 0.699
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.699
1amo FMNNADPH--cytochrome P450 reductase / 0.695
1fue FMNFlavodoxin / 0.695
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.695
1czn FMNFlavodoxin / 0.693
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.693
1ofv FMNFlavodoxin / 0.693
3ojx FMNNADPH--cytochrome P450 reductase / 0.693
4oxx FMNCindoxin / 0.692
1aku FMNFlavodoxin / 0.687
5tgz FMNCannabinoid receptor 1 / 0.686
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.685
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.684
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.683
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.682
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.682
5xr8 FMNCannabinoid receptor 1 / 0.682
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.680
1usc FMNMonooxygenase / 0.678
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.678
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.677
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.676
3qfr FMNNADPH--cytochrome P450 reductase / 0.675
3f6r FMNFlavodoxin / 0.673
4r81 FMNPredicted NADH dehydrogenase / 0.673
1yob FMNFlavodoxin 2 / 0.672
3bnk FMNFlavoredoxin / 0.671
3qvr FADGlucose oxidase 1.1.3.4 0.671
4yao FMNNADPH--cytochrome P450 reductase / 0.671
2h8x FMNXenA / 0.670
3n3a FMNProtein NrdI / 0.670
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.668
4fx2 FMNFlavodoxin / 0.668
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.667
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.667
3ojw FMNNADPH--cytochrome P450 reductase / 0.666
3f90 FMNFlavodoxin / 0.665
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.665
2w5u FMNFlavodoxin / 0.664
3lcm FADPutative oxidoreductase / 0.664
2bn4 FMNNADPH--cytochrome P450 reductase / 0.663
2d29 FADAcyl-CoA dehydrogenase / 0.663
1j9g FMNFlavodoxin / 0.662
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.662
5xra FMNCannabinoid receptor 1 / 0.661
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.658
1xyy FMNFlavodoxin / 0.658
4hs4 FMNChromate reductase / 0.658
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.656
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.656
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.656
5cho FADFlavin reductase / 0.656
4b64 FADL-ornithine N(5)-monooxygenase / 0.654
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.652
3n39 FMNProtein NrdI / 0.652
1t5b FMNFMN-dependent NADH-azoreductase / 0.651
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.650
2zfa FMNLactate oxidase / 0.650