Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ofi ADK 3-methyladenine DNA glycosylase I

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ofi ADK3-methyladenine DNA glycosylase I / 0.710
1dgm ADNAdenosine kinase 2.7.1.20 0.660
1n6m ADPProtein claret segregational / 0.660
1o51 ADPUPF0166 protein TM_0021 / 0.660
1onp FOM1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.660
1u26 IHSMyo-inositol hexaphosphate phosphohydrolase / 0.660
1v8k ANPKinesin-like protein KIF2C / 0.660
1ybu APCProbable lignin peroxidase LipJ / 0.660
1yf8 P6CBeta-galactoside-specific lectin 4 3.2.2.22 0.660
2e91 ZOLGeranylgeranyl pyrophosphate synthase / 0.660
2gyu HI6Acetylcholinesterase 3.1.1.7 0.660
2jjx ATPUridylate kinase / 0.660
2oem 1AE2,3-diketo-5-methylthiopentyl-1-phosphate enolase 5.3.2.5 0.660
2qf2 GDPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.660
2vd7 PD2Lysine-specific demethylase 4A 1.14.11 0.660
2zfi ADPKinesin-like protein KIF1A / 0.660
2zsb ADPPantothenate kinase 2.7.1.33 0.660
3af3 GCPPantothenate kinase 2.7.1.33 0.660
3ar5 TM1Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.660
3au2 DGTDNA polymerase beta family (X family) / 0.660
3beg ANPSRSF protein kinase 1 2.7.11.1 0.660
3cob ADPKinesin heavy chain-like protein / 0.660
3jvv ACPTwitching mobility protein / 0.660
3l1c ADPProtein claret segregational / 0.660
3lm9 ADPPutative fructokinase 2.7.1.4 0.660
3ppo DCKGlycine betaine/carnitine/choline-binding protein OpuCC / 0.660
3ta2 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.660
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.660
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.660
4a8m GTPRNA-directed RNA polymerase 2.7.7.48 0.660
4at8 ATPInterleukin enhancer-binding factor 2 / 0.660
4cei ANPATP-dependent helicase/deoxyribonuclease subunit B 3.1 0.660
4cvl ACPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase / 0.660
4diq PD2Ribosomal oxygenase 1 / 0.660
4dpg APCLysine--tRNA ligase 6.1.1.6 0.660
4dsj DGTDNA polymerase I / 0.660
4e09 ACPPlasmid partitioning protein ParF / 0.660
4fdu IHSPutative multiple inositol polyphosphate histidine phosphatase 1 / 0.660
4ie5 MD6Alpha-ketoglutarate-dependent dioxygenase FTO / 0.660
4k6r ATPBifunctional protein GlmU / 0.660
4lxl PD2Lysine-specific demethylase 4B 1.14.11 0.660
4rf9 AGSArginine kinase 2.7.3.3 0.660
4uz6 SCRPalmitoleoyl-protein carboxylesterase NOTUM / 0.660
5egh PCEctonucleotide pyrophosphatase/phosphodiesterase family member 6 / 0.660
5eso ISC2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.660
1pvo ANPTranscription termination factor Rho 3.6.4 0.655
3w8r ACPUridine kinase / 0.655