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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oc4 IMH Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.849
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.776
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.772
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.769
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.728
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.714
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.705
2p4s DIHAGAP005945-PA / 0.696
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.695
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.694
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.691
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.688
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.678
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.672
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.669
2q7o IMHPurine nucleoside phosphorylase 2.4.2.1 0.656