Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oat PFM Ornithine aminotransferase, mitochondrial 2.6.1.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oat PFMOrnithine aminotransferase, mitochondrial 2.6.1.13 1.163
4adc PLPSuccinylornithine transaminase 2.6.1.81 0.806
4zwm PLPOrnithine aminotransferase, mitochondrial, putative / 0.806
1wkg POI[LysW]-aminoadipate semialdehyde transaminase / 0.782
4ao4 PLKBeta-transaminase / 0.773
4jey PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.768
3tfu PL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.720
4jf1 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.705
4zm3 PLPAminotransferase / 0.665
1mlz PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.659