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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2o4j VD4 Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2o4j VD4Vitamin D3 receptor / 1.461
1rjk VDZVitamin D3 receptor / 1.371
1rkg VD1Vitamin D3 receptor / 1.179
3vtb TKAVitamin D3 receptor / 1.165
3vtc TK3Vitamin D3 receptor / 1.116
1rkh VD2Vitamin D3 receptor / 1.097
2zlc VDXVitamin D3 receptor / 1.093
2har OCCVitamin D3 receptor / 1.061
3dr1 C5DVitamin D3 receptor A / 1.056
3vru YS3Vitamin D3 receptor / 1.053
2o4r VD5Vitamin D3 receptor / 1.052
3vrt YS2Vitamin D3 receptor / 1.036
4ruj VDXVitamin D3 receptor A / 1.035
3vrv YSDVitamin D3 receptor / 1.034
1rk3 VDXVitamin D3 receptor / 1.032
3vtd TKDVitamin D3 receptor / 1.018
3vt3 VDXVitamin D3 receptor / 1.013
4ia1 BIVVitamin D3 receptor A / 1.011
2zl9 VDAVitamin D3 receptor / 1.006
1s19 MC9Vitamin D3 receptor / 0.996
4ruo BIVVitamin D3 receptor A / 0.982
1ie9 VDXVitamin D3 receptor / 0.975
2has C3OVitamin D3 receptor / 0.972
2hb7 O1CVitamin D3 receptor / 0.970
4ia3 BIVVitamin D3 receptor A / 0.961
3vt8 YI3Vitamin D3 receptor / 0.958
3m7r VDXVitamin D3 receptor / 0.957
2hbh XE4Vitamin D3 receptor A / 0.950
3vt7 VDXVitamin D3 receptor / 0.949
1txi TX5Vitamin D3 receptor / 0.947
4itf TFYVitamin D3 receptor / 0.937
2hc4 VDXVitamin D3 receptor A / 0.918
1db1 VDXVitamin D3 receptor / 0.908
2ham C33Vitamin D3 receptor / 0.902
2zla VDBVitamin D3 receptor / 0.902
3vt6 5YIVitamin D3 receptor / 0.899
1ie8 KH1Vitamin D3 receptor / 0.898
3kpz ZNEVitamin D3 receptor / 0.898
4ia2 BIVVitamin D3 receptor A / 0.895
3vt5 YI2Vitamin D3 receptor / 0.890
3a78 3EVVitamin D3 receptor / 0.887
3vrw YS5Vitamin D3 receptor / 0.884
3vt9 YI4Vitamin D3 receptor / 0.882
1s0z EB1Vitamin D3 receptor / 0.870
4ite TEYVitamin D3 receptor / 0.858
2hcd BIVVitamin D3 receptor A / 0.854
2hb8 MVDVitamin D3 receptor / 0.843
4ia7 BIVVitamin D3 receptor A / 0.811
3vt4 5YIVitamin D3 receptor / 0.799
3w0i O11Vitamin D3 receptor / 0.676
4g2i 0VQVitamin D3 receptor / 0.662
3w0j T08Vitamin D3 receptor / 0.651
4rup H97Vitamin D3 receptor A / 0.650