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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nv4 SAM S-adenosyl-L-methionine-binding protein AF_0241

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2nv4 SAMS-adenosyl-L-methionine-binding protein AF_0241 / 1.070
3iv6 SAMUncharacterized protein / 0.670
2a84 ATPPantothenate synthetase 6.3.2.1 0.666
2z02 ATPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.654
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.653
2xcl ANPPhosphoribosylamine--glycine ligase / 0.651