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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nom DUT Poly(A) polymerase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2nom DUTPoly(A) polymerase, putative / 1.056
2q0f UTPPoly(A) polymerase, putative / 0.748
2b56 UTPRNA editing complex protein MP57 / 0.747
4fh5 UTPTerminal uridylyltransferase cid1 / 0.720
2q0c CTPPoly(A) polymerase, putative / 0.708
2q0d ATPPoly(A) polymerase, putative / 0.701
4h5c YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.687
4fhp UTPTerminal uridylyltransferase cid1 / 0.684
2dr8 CTPCCA-adding enzyme 2.7.7.72 0.680
4k97 ATPCyclic GMP-AMP synthase / 0.672
2ikf UTPPoly(A) polymerase, putative / 0.667
1v11 TDP2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial 1.2.4.4 0.663
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.659
4khy TTPDNA-directed DNA polymerase / 0.655