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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nn7 M29 Carbonic anhydrase 1 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.834
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.707
4uov AZMCarbonate dehydratase / 0.704
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.697
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.695
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.695
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.693
4xiw AZMCarbonic anhydrase, alpha type / 0.692
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.690
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.690
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.688
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.682
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.682
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.680
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.680
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.678
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.678
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.677
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.676
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.676
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.675
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.674
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.673
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.672
1okm SABCarbonic anhydrase 2 4.2.1.1 0.672
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.671
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.671
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.669
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.668
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.668
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.668
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.668
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.666
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.666
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.666
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.666
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.666
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.666
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.665
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.665
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.665
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.664
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.664
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.663
3mho J43Carbonic anhydrase 2 4.2.1.1 0.663
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.662
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.661
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.661
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.660
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.657
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.657
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.656
1okn STBCarbonic anhydrase 2 4.2.1.1 0.655
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.655
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.654
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.654
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.653
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.652
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.651
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.650
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.650
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.650