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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nmt NHM Glycylpeptide N-tetradecanoyltransferase 2.3.1.97

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.812
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 1.107
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 1.103
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 1.081
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 1.074
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 1.073
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 1.069
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 1.066
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.065
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 1.054
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 1.054
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 1.046
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 1.036
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 1.032
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 1.032
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 1.031
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.029
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 1.028
4cax MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 1.014
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 1.009
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 1.000
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 0.995
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.992
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 0.980
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 0.978
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 0.969
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 0.965
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 0.951
5ag4 MYAGlycylpeptide N-tetradecanoyltransferase / 0.923
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 0.872
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 0.868
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 0.858
4cav MYAGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.804
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.668
2uyw BTNAvd protein / 0.663
2fhl BNIAvidin-related protein 4/5 / 0.661
2c4i BTNAvidin / 0.660
1y52 BTNAvidin-related protein 4/5 / 0.657
3wyp BSOStreptavidin / 0.654
2izh BTNStreptavidin / 0.652