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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2mwg FMN Blue-light photoreceptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2mwg FMNBlue-light photoreceptor / 0.937
5j3w FMNSensory box protein / 0.708
4hnb FMNLOV protein / 0.707
1n9n FMNPutative blue light receptor / 0.679
5j4e FMNSensory box protein / 0.670
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.658
4hia FMNLOV protein / 0.657
4q71 FADBifunctional protein PutA / 0.654
3e2s FADBifunctional protein PutA 1.5.5.2 0.652