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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2k62 ITL Fatty acid-binding protein, liver

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2k62 ITLFatty acid-binding protein, liver / 1.325
2lba CHOFatty acid binding protein 6 / 0.710
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.682
1lke DOGBilin-binding protein / 0.681
4c49 HCYCorticosteroid-binding globulin / 0.656
3w5q 3KLVitamin D3 receptor / 0.655
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.655
2jn3 JN3Fatty acid-binding protein, liver / 0.653
5epo TUD7-alpha-hydroxysteroid deydrogenase / 0.651