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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jj3 JJ3 Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jj3 JJ3Estrogen receptor beta / 1.257
2z4b DC8Estrogen receptor beta / 0.870
1zaf 789Estrogen receptor beta / 0.743
1yy4 4NAEstrogen receptor beta / 0.742
1yye 196Estrogen receptor beta / 0.721
2iog IOGEstrogen receptor / 0.708
1qkm GENEstrogen receptor beta / 0.688
3q95 ESLEstrogen receptor / 0.686
1x76 697Estrogen receptor beta / 0.680
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
3owu EQUSteroid Delta-isomerase 5.3.3.1 0.659
3ols ESTEstrogen receptor beta / 0.657
2uxh QUEHTH-type transcriptional regulator TtgR / 0.650
4lvg 20ONicotinamide phosphoribosyltransferase 2.4.2.12 0.650