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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jir MGD Periplasmic nitrate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jir MGDPeriplasmic nitrate reductase / 1.350
1fdo MGDFormate dehydrogenase H 1.1.99.33 0.831
2nya MGDPeriplasmic nitrate reductase 1.7.99.4 0.786
1fdi MGDFormate dehydrogenase H 1.1.99.33 0.776
4ydd MGDDMSO reductase family type II enzyme, molybdopterin subunit / 0.678