Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ji8 FYN Oxalyl-CoA decarboxylase 4.1.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2ji8 FYNOxalyl-CoA decarboxylase 4.1.1.8 1.174
2ji7 OXTOxalyl-CoA decarboxylase 4.1.1.8 0.919
2ji6 OXKOxalyl-CoA decarboxylase 4.1.1.8 0.910
2q29 ACOOxalyl-CoA decarboxylase 4.1.1.8 0.656