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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jh0 701 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jh0 701Prothrombin 3.4.21.5 0.866
2jh6 894Prothrombin 3.4.21.5 0.738
2jh5 895Prothrombin 3.4.21.5 0.730
1sl3 170Prothrombin 3.4.21.5 0.667
1ta6 177Prothrombin 3.4.21.5 0.661
1z71 L17Prothrombin 3.4.21.5 0.658
1zrb 062Prothrombin 3.4.21.5 0.654
4ayy 9MXProthrombin 3.4.21.5 0.652
1nt1 T76Prothrombin 3.4.21.5 0.651
3dux 64UProthrombin 3.4.21.5 0.650