Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jgs BTN Avidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jgs BTNAvidin / 0.996
2uyw BTNAvd protein / 0.885
3vgw NVZAvidin / 0.876
1y52 BTNAvidin-related protein 4/5 / 0.866
3vhi VHIAvidin / 0.849
2uz2 BTNAvd protein / 0.845
2c4i BTNAvidin / 0.835
4bcs BTNAvidin-related protein 4/5 / 0.835
4gda BTNStreptavidin / 0.788
2rte BTNStreptavidin / 0.787
2izf BTNStreptavidin / 0.785
2izj BTNStreptavidin / 0.779
1lcw SHMStreptavidin / 0.772
2rtf BTNStreptavidin / 0.771
3ry2 BTNStreptavidin / 0.771
4bx7 B4FStreptavidin / 0.770
2izh BTNStreptavidin / 0.768
2rtd BTNStreptavidin / 0.767
2rtg BTNStreptavidin / 0.766
1mk5 BTNStreptavidin / 0.765
1stp BTNStreptavidin / 0.764
2izg BTNStreptavidin / 0.761
3wyq BTNStreptavidin / 0.760
1n43 BTNStreptavidin / 0.759
2zsc BTNTamavidin2 / 0.758
1swe BTNStreptavidin / 0.754
2avi BTNAvidin / 0.754
1n9m BTNStreptavidin / 0.753
2fhl BNIAvidin-related protein 4/5 / 0.752
2fhn BNIAvidin-related protein 4/5 / 0.750
2y3f BTNStreptavidin / 0.750
3wzn BTNStreptavidin / 0.750
1swp BTQStreptavidin / 0.749
1lcz BH7Streptavidin / 0.748
4gd9 BTNStreptavidin / 0.731
4bj8 BTNAvidin / 0.728
3t2w BTNAvidin/streptavidin / 0.726
1swg BTNStreptavidin / 0.721
2rtn IMIStreptavidin / 0.714
1swr BTNStreptavidin / 0.711
3ew2 BTNHypothetical conserved protein / 0.702
1swn BTNStreptavidin / 0.694
1mep BTNStreptavidin / 0.693
1avd BTNAvidin / 0.684
4dve BTNBiotin transporter BioY / 0.662
3vhm NPKAvidin / 0.661
1swd BTNStreptavidin / 0.652
4ggz BTNBll1558 protein / 0.650