Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jfa RAL Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jfa RALEstrogen receptor / 1.258
1qkn RALEstrogen receptor beta / 0.904
1yim CM4Estrogen receptor / 0.868
1err RALEstrogen receptor / 0.821
2jf9 OHTEstrogen receptor / 0.778
1xpc AITEstrogen receptor / 0.767
1xp6 AIUEstrogen receptor / 0.763
1xp9 AIJEstrogen receptor / 0.763
2qe4 JJ3Estrogen receptor / 0.747
2ayr L4GEstrogen receptor / 0.744
1sj0 E4DEstrogen receptor / 0.714
2ouz C3DEstrogen receptor / 0.703
1yin CM3Estrogen receptor / 0.701
2fsz OHTEstrogen receptor beta / 0.685
1uom PTIEstrogen receptor / 0.683
2pog WSTEstrogen receptor / 0.678
4iv4 1GSEstrogen receptor / 0.674
1l2i ETCEstrogen receptor / 0.671
4ivw 1GJEstrogen receptor / 0.671
4e5f 0N7Polymerase acidic protein / 0.663
3erd DESEstrogen receptor / 0.661
2qgt EEDEstrogen receptor / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
3ert OHTEstrogen receptor / 0.658
1xqc AEJEstrogen receptor / 0.655
2j7x ESTEstrogen receptor beta / 0.653
2q70 DC8Estrogen receptor / 0.651