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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jf9 OHT Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jf9 OHTEstrogen receptor / 1.288
2bj4 OHTEstrogen receptor / 1.122
3ert OHTEstrogen receptor / 0.974
1xqc AEJEstrogen receptor / 0.845
2gpv OHTEstrogen-related receptor gamma / 0.834
2ouz C3DEstrogen receptor / 0.822
4iv4 1GSEstrogen receptor / 0.787
2jfa RALEstrogen receptor / 0.778
2gpu OHTEstrogen-related receptor gamma / 0.768
1xp9 AIJEstrogen receptor / 0.764
4zn7 DESEstrogen receptor / 0.764
1yim CM4Estrogen receptor / 0.755
2ewp TXFEstrogen-related receptor gamma / 0.754
4iu7 1GMEstrogen receptor / 0.751
2qe4 JJ3Estrogen receptor / 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2fsz OHTEstrogen receptor beta / 0.739
1xp1 AIHEstrogen receptor / 0.726
1gwq ZTWEstrogen receptor / 0.721
1yin CM3Estrogen receptor / 0.716
1l2i ETCEstrogen receptor / 0.713
3erd DESEstrogen receptor / 0.703
2p7z OHTEstrogen-related receptor gamma / 0.700
1xpc AITEstrogen receptor / 0.699
4e5l DBHPolymerase acidic protein / 0.694
2ayr L4GEstrogen receptor / 0.689
1uom PTIEstrogen receptor / 0.675
1s9q OHTEstrogen-related receptor gamma / 0.672
1xp6 AIUEstrogen receptor / 0.665
1sj0 E4DEstrogen receptor / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4ivw 1GJEstrogen receptor / 0.657
4iwc 1GVEstrogen receptor / 0.650