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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jev NHQ Diamine acetyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jev NHQDiamine acetyltransferase 1 / 1.205
4kub COAUncharacterized protein / 0.763
2b3v ACODiamine acetyltransferase 1 / 0.758
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.748
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.746
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.745
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.741
1wwz ACOUncharacterized protein / 0.732
3bj7 COADiamine acetyltransferase 1 / 0.723
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.718
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.717
4jwp ACOGCN5-related N-acetyltransferase / 0.713
2jdc CAOProbable acetyltransferase / 0.707
3gy9 COAGCN5-related N-acetyltransferase / 0.705
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.701
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.698
3mgd ACOPredicted acetyltransferase / 0.697
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.691
3gya COAGCN5-related N-acetyltransferase / 0.689
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.686
3bj8 COADiamine acetyltransferase 1 / 0.686
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.683
3exn ACOProbable acetyltransferase / 0.683
5kf2 COAPredicted acetyltransferase / 0.679
2psw COAN-alpha-acetyltransferase 50 / 0.678
5kf1 COAPredicted acetyltransferase / 0.676
2b58 COADiamine acetyltransferase 1 / 0.675
3s6f COAUncharacterized protein / 0.672
5kf8 ACOPredicted acetyltransferase / 0.671
1kuy COTSerotonin N-acetyltransferase / 0.669
3fbu COAAcetyltransferase, GNAT family / 0.669
3r1k COAN-acetyltransferase Eis / 0.668
2bsw CAOProbable acetyltransferase / 0.664
5kf1 ACOPredicted acetyltransferase / 0.662
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.659
1qsn COAHAT A1 / 0.657