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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jdv L20 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jdv L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.312
2jds L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.979
2uzt SS3cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.930
3l9m L9McAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.863
2uzw SS4cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.801
2uzu L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.797
3kkv B99cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.783
2oh0 2PYcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.771
5dgz L20Serine/threonine-protein kinase pim-1 2.7.11.1 0.769
2uzv SS5cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.765
4agu D15Cyclin-dependent kinase-like 1 / 0.730
3l9l L9LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.719
2f7e 2EAcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.709
2f7x 4EAcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.697
3l9n L9NcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.692
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.691
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.687
3v8s 0HDRho-associated protein kinase 1 2.7.11.1 0.674
2zmd 537Dual specificity protein kinase TTK 2.7.12.1 0.673
3vqh IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
4g3f 0WBMitogen-activated protein kinase kinase kinase 14 2.7.11.25 0.667
3zly YSODual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.665
4uxq 0LIFibroblast growth factor receptor 4 2.7.10.1 0.665
4c59 FEFCyclin-G-associated kinase 2.7.11.1 0.664
2xj2 985Serine/threonine-protein kinase pim-1 2.7.11.1 0.661
3zze 6XPHepatocyte growth factor receptor 2.7.10.1 0.661
2jiz STLATP synthase subunit alpha, mitochondrial / 0.660
2jiz STLATP synthase subunit gamma, mitochondrial / 0.660
3gfe P37Mitogen-activated protein kinase 14 / 0.659
3rgf BAXCyclin-dependent kinase 8 2.7.11.22 0.658
2uw4 L15cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
3bv3 P39Mitogen-activated protein kinase 14 / 0.653
5av4 GENDeath-associated protein kinase 1 2.7.11.1 0.652
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.651
1p4f DRGDeath-associated protein kinase 1 2.7.11.1 0.650