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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jb4 A14 Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jb4 A14Isopenicillin N synthase 1.21.3.1 1.065
1hb3 SCVIsopenicillin N synthase 1.21.3.1 0.912
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.880
2ivi ACWIsopenicillin N synthase 1.21.3.1 0.873
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.870
1hb1 OCVIsopenicillin N synthase 1.21.3.1 0.855
1odn APVIsopenicillin N synthase 1.21.3.1 0.855
1bk0 ACVIsopenicillin N synthase 1.21.3.1 0.847
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.836
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.827
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.824
2vbd V10Isopenicillin N synthase 1.21.3.1 0.824
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.817
2vcm M11Isopenicillin N synthase 1.21.3.1 0.816
1w06 W05Isopenicillin N synthase 1.21.3.1 0.797
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.787
1blz ACVIsopenicillin N synthase 1.21.3.1 0.783
1obn ASVIsopenicillin N synthase 1.21.3.1 0.770
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.759
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.758
3zku HCVIsopenicillin N synthase 1.21.3.1 0.705
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.704
2bu9 HFVIsopenicillin N synthase 1.21.3.1 0.694
3lnc 5GPGuanylate kinase / 0.684
3zky WT4Isopenicillin N synthase 1.21.3.1 0.673
3uwq U5POrotidine 5'-phosphate decarboxylase / 0.670
4bqs K2QShikimate kinase 2.7.1.71 0.670
1dra MTXDihydrofolate reductase 1.5.1.3 0.665
1qmf KEFPenicillin-binding protein 2x / 0.664
3ntd COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.662
1dhj MTXDihydrofolate reductase 1.5.1.3 0.658
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.653
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.653
2ahc VNLChorismate pyruvate-lyase / 0.652