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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jas DTP Deoxyguanosine kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jas DTPDeoxyguanosine kinase / 1.183
5awm ANPStress-activated protein kinase JNK 2.7.11.24 0.680
2vp0 TTPDeoxynucleoside kinase / 0.678
3ruv ANPChaperonin / 0.673
1oe0 TTPDeoxynucleoside kinase / 0.671
4o8j ADNRNA 3'-terminal phosphate cyclase 6.5.1.4 0.671
1bif AGS6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 2.7.1.105 0.666
4kh0 ATPAspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002} / 0.664
4xsg GSPTransforming protein RhoA / 0.663
2vp2 DGTDeoxynucleoside kinase / 0.659
4v02 ATPSite-determining protein / 0.659
1r0z ATPCystic fibrosis transmembrane conductance regulator / 0.658
3h5n ATPMccB protein / 0.653
1ayl ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.650