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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2j8z NAP Quinone oxidoreductase PIG3 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2j8z NAPQuinone oxidoreductase PIG3 1 1.247
2oby NAPQuinone oxidoreductase PIG3 1 0.780
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.777
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.773
2c0c NAPProstaglandin reductase 3 1 0.717
3jyn NDPQuinone oxidoreductase / 0.717
1qor NDPQuinone oxidoreductase 1 / 0.697
2y05 NAPProstaglandin reductase 1 / 0.690
3iup NDPPossible NADH oxidoreductase / 0.669
3slk NDPPolyketide synthase extender module 2 / 0.668
5dp2 NAPCurF / 0.668
3tqh NDPQuinone oxidoreductase / 0.651
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.650
4plp NADHomospermidine synthase 2.5.1.44 0.650