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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2j4q TTP dCTP deaminase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2j4q TTPdCTP deaminase / 0.972
2qxx TTPdCTP deaminase 3.5.4.13 0.725
2we3 DUTDeoxyuridine 5'-triphosphate nucleotidohydrolase / 0.720
2v9x DUTdCTP deaminase / 0.716
4gv8 DUPDUTPase / 0.687
1xs4 DCPdCTP deaminase / 0.680
1snf UMPDeoxyuridine 5'-triphosphate nucleotidohydrolase 3.6.1.23 0.675
4xjc TTPdCTP deaminase / 0.671
2ol0 DUDDUTP pyrophosphatase / 0.668
2hxd DUPdCTP deaminase, dUMP-forming 3.5.4.30 0.667