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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2j4a OEF Thyroid hormone receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2j4a OEFThyroid hormone receptor beta / 1.371
1nav IH5Thyroid hormone receptor alpha / 0.895
1nax IH5Thyroid hormone receptor beta / 0.857
1n46 PFAThyroid hormone receptor beta / 0.771
2pin 4HYThyroid hormone receptor beta / 0.695
3d57 4HYThyroid hormone receptor beta / 0.695
1nq2 4HYThyroid hormone receptor beta / 0.676
1nq1 4HYThyroid hormone receptor beta / 0.666