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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2j09 FAD Deoxyribodipyrimidine photo-lyase 4.1.99.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.406
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.347
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.292
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.281
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.014
3cvu FADRE11660p / 0.984
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.978
1u3d FADCryptochrome-1 / 0.963
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.961
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.951
3cvy FADRE11660p / 0.949
1np7 FADCryptochrome DASH / 0.947
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.945
2wq6 FADRE11660p / 0.939
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.926
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.923
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.914
4i6g FADCryptochrome-2 / 0.910
1u3c FADCryptochrome-1 / 0.909
2wq7 FADRE11660p / 0.891
4dja FAD(6-4) photolyase / 0.878
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.846
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.843
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.836
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.828
2wb2 FADRE11660p / 0.820
4cdm FADDeoxyribodipyrimidine photolyase / 0.816
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.803
4gu5 FADCryptochrome-1 / 0.778
4jzy FADCryptochrome-1 / 0.729
2iid FADL-amino-acid oxidase 1.4.3.2 0.662
3esz FMNFlavodoxin / 0.662
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.662
5buk FADFADH2-dependent halogenase / 0.661
4eet FMNPhototropin-2 2.7.11.1 0.660
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.658
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.657
1tdo FADL-amino-acid oxidase 1.4.3.2 0.656
4eep FMNPhototropin-2 2.7.11.1 0.654
4yco FMNtRNA-dihydrouridine(16) synthase / 0.650