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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2izj BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2izj BTNStreptavidin / 1.036
2rte BTNStreptavidin / 1.019
2rtg BTNStreptavidin / 1.015
2rtf BTNStreptavidin / 1.013
2rtd BTNStreptavidin / 1.009
3wyq BTNStreptavidin / 1.006
2izg BTNStreptavidin / 1.002
2izi BTNStreptavidin / 1.002
1mk5 BTNStreptavidin / 1.000
3ry2 BTNStreptavidin / 0.999
2y3f BTNStreptavidin / 0.997
2izf BTNStreptavidin / 0.992
3wyp BSOStreptavidin / 0.985
2izh BTNStreptavidin / 0.979
4yvb BTNStreptavidin / 0.973
1i9h BNIStreptavidin / 0.956
1luq BTNStreptavidin / 0.952
4gda BTNStreptavidin / 0.949
1swe BTNStreptavidin / 0.947
1n43 BTNStreptavidin / 0.941
3rdo BTNStreptavidin / 0.937
4gd9 BTNStreptavidin / 0.934
1nqm BTNStreptavidin / 0.932
1df8 BTNStreptavidin / 0.929
3wzn BTNStreptavidin / 0.926
4dne DTBStreptavidin / 0.919
1n9m BTNStreptavidin / 0.918
1swr BTNStreptavidin / 0.915
1ndj BTNStreptavidin / 0.905
2rtp IMIStreptavidin / 0.905
4bx7 B4FStreptavidin / 0.901
1lcw SHMStreptavidin / 0.897
3rdq DTBStreptavidin / 0.894
2rtq IMIStreptavidin / 0.887
2zsc BTNTamavidin2 / 0.887
4z28 BTNHoefavidin / 0.877
1rxj BNIStreptavidin / 0.874
2uyw BTNAvd protein / 0.873
2rtr IMIStreptavidin / 0.870
1mep BTNStreptavidin / 0.866
1swg BTNStreptavidin / 0.864
1swt BTNStreptavidin / 0.862
2rto IMIStreptavidin / 0.849
1swp BTNStreptavidin / 0.846
2fhn BNIAvidin-related protein 4/5 / 0.845
1rxh BNIStreptavidin / 0.844
1y52 BTNAvidin-related protein 4/5 / 0.840
1swp BTQStreptavidin / 0.832
2fhl BNIAvidin-related protein 4/5 / 0.832
3ew2 BTNHypothetical conserved protein / 0.827
3t2w BTNAvidin/streptavidin / 0.824
2c4i BTNAvidin / 0.822
1swn BTNStreptavidin / 0.820
4bj8 BTNAvidin / 0.814
4bcs BTNAvidin-related protein 4/5 / 0.805
1swd BTNStreptavidin / 0.795
2rtm IMIStreptavidin / 0.794
2jgs BTNAvidin / 0.779
2rtl IMIStreptavidin / 0.766
3vhi VHIAvidin / 0.757
3vgw NVZAvidin / 0.754
2uz2 BTNAvd protein / 0.751
1stp BTNStreptavidin / 0.727
2rtn IMIStreptavidin / 0.711
3vhm NPKAvidin / 0.704
4ggz BTNBll1558 protein / 0.701
3vhh VHHAvidin / 0.682
1avd BTNAvidin / 0.678
1ij8 BNIAvidin / 0.671
1lcz BH7Streptavidin / 0.670
2avi BTNAvidin / 0.667
2rtk GLLStreptavidin / 0.657