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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ixk TDO dTDP-4-dehydrorhamnose 3,5-epimerase 5.1.3.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ixk TDOdTDP-4-dehydrorhamnose 3,5-epimerase 5.1.3.13 1.329
4hmz 18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase 5.1.3.27 0.734
4hn1 TYDdTDP-4-dehydro-6-deoxyglucose 3-epimerase 5.1.3.27 0.707
1p72 THMThymidine kinase / 0.676
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.669
2c2a ADPSensor histidine kinase / 0.666
1zm7 TTPDeoxynucleoside kinase / 0.663
2pja 33ZCarboxypeptidase B / 0.651