Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ivf MGD Alpha-subunit of ethylbenzene dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ivf MGDAlpha-subunit of ethylbenzene dehydrogenase / 1.363
4ydd MGDDMSO reductase family type II enzyme, molybdopterin subunit / 0.804
5ch7 MGDDMSO reductase family type II enzyme, molybdopterin subunit / 0.786
2vpz MGDThiosulfate reductase / 0.729
2nya MGDPeriplasmic nitrate reductase 1.7.99.4 0.711
1lvg 5GPGuanylate kinase 2.7.4.8 0.667
1ex7 5GPGuanylate kinase 2.7.4.8 0.658