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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ilv C5P Alpha-2,3/2,6-sialyltransferase/sialidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ilv C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 1.015
2ex1 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.980
2iib C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.879
4x8o AP5Adenylate kinase / 0.686
2ii6 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.684
5c1p ADPD-alanine--D-alanine ligase / 0.664
1e4v AP5Adenylate kinase / 0.659
2ejz SAHDiphthine synthase / 0.652
4uhr NGIAdenosine receptor A2a / 0.650