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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ilu NDP Lactaldehyde dehydrogenase 1.2.1.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ilu NDPLactaldehyde dehydrogenase 1.2.1.22 1.013
2ehq NAP1-pyrroline-5-carboxylate dehydrogenase / 0.692
1eyy NAPNADP-dependent fatty aldehyde dehydrogenase 1.2.1.4 0.682
4nmk NAPAldehyde dehydrogenase / 0.682
4f3x NADPutative aldehyde dehydrogenase / 0.669
1uxv NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.668
1qi1 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.665
4h73 NDPAldehyde dehydrogenase / 0.665
1a4z NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.660
3rhl NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.656
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.656