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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2il2 LIX Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2il2 LIXRenin 3.4.23.15 1.346
2g1y 5IGRenin 3.4.23.15 0.893
2g1r 3IGRenin 3.4.23.15 0.845
2g21 L1BRenin 3.4.23.15 0.827
2iko 7IGRenin 3.4.23.15 0.804
2g22 6IGRenin 3.4.23.15 0.774
2g1o 2IGRenin 3.4.23.15 0.763
2g24 7IGRenin 3.4.23.15 0.723
2g1s 4IGRenin 3.4.23.15 0.702
2i4q UA4Renin 3.4.23.15 0.699
2iku LIYRenin 3.4.23.15 0.665