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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iku LIY Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2iku LIYRenin 3.4.23.15 1.089
2g21 L1BRenin 3.4.23.15 0.900
2iko 7IGRenin 3.4.23.15 0.843
2g22 6IGRenin 3.4.23.15 0.805
2g24 7IGRenin 3.4.23.15 0.798
2g1y 5IGRenin 3.4.23.15 0.794
2g1s 4IGRenin 3.4.23.15 0.775
2i4q UA4Renin 3.4.23.15 0.771
2g1r 3IGRenin 3.4.23.15 0.753
2g1n 1IGRenin 3.4.23.15 0.752
2g1o 2IGRenin 3.4.23.15 0.704
2il2 LIXRenin 3.4.23.15 0.665