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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ikf UTP Poly(A) polymerase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ikf UTPPoly(A) polymerase, putative / 1.131
2b51 UTPRNA editing complex protein MP57 / 0.950
2b56 UTPRNA editing complex protein MP57 / 0.888
2q0d ATPPoly(A) polymerase, putative / 0.855
2q66 ATPPoly(A) polymerase 2.7.7.19 0.823
2q0f UTPPoly(A) polymerase, putative / 0.810
3hiy UTPUncharacterized protein / 0.807
4fhp UTPTerminal uridylyltransferase cid1 / 0.780
4fh5 UTPTerminal uridylyltransferase cid1 / 0.728
4xj4 3ATCyclic GMP-AMP synthase / 0.725
4u03 GTPCyclic GMP-AMP synthase / 0.713
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.690
2q0c CTPPoly(A) polymerase, putative / 0.688
3q23 G2PVirion DNA-directed RNA polymerase / 0.688
1qsy DDSDNA polymerase I, thermostable 2.7.7.7 0.685
2q0g UPUPoly(A) polymerase, putative / 0.679
1qtm TTPDNA polymerase I, thermostable 2.7.7.7 0.677
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.677
4u0m GTPCyclic GMP-AMP synthase / 0.673
2nom DUTPoly(A) polymerase, putative / 0.667
2p0a ANPSynapsin-3 / 0.667
4k97 ATPCyclic GMP-AMP synthase / 0.664
4lt6 3ATPoly(A) polymerase gamma 2.7.7.19 0.660
5a2w AGSMitochondrial poly(A) polymerase / 0.659
4dtm DCPDNA-directed DNA polymerase / 0.657
3t3f N5PDNA polymerase I, thermostable 2.7.7.7 0.656
3g6x DGTDNA polymerase iota 2.7.7.7 0.654
4dtj TTPDNA-directed DNA polymerase / 0.654
2dxe GDPNucleoside diphosphate kinase 2.7.4.6 0.652
4dkb DUNDeoxyuridine triphosphatase, putative / 0.652
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.652
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.650