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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2if8 ADP Inositol polyphosphate multikinase 2.7.1.151

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2if8 ADPInositol polyphosphate multikinase 2.7.1.151 0.902
1w2c ANPInositol-trisphosphate 3-kinase A 2.7.1.127 0.708
3g8d ADPBiotin carboxylase 6.3.4.14 0.708
4o4d ATPKinase / 0.698
1w2d ADPInositol-trisphosphate 3-kinase A 2.7.1.127 0.696
3att ATPPutative aminoglycoside phosphotransferase 2.7.1 0.688
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 0.675
4gvj ADPNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.674
4o4f ATPKinase / 0.674
4riy ADPEpidermal growth factor receptor 2.7.10.1 0.674
4gyi ADPUncharacterized protein / 0.672
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
3o7l ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.667
3rv4 ADPBiotin carboxylase 6.3.4.14 0.667
4jqe ANPCasein kinase II subunit alpha 2.7.11.1 0.666
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.662
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.661
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.660
3nsz ANPCasein kinase II subunit alpha 2.7.11.1 0.660
2xs0 ANPMitogen-activated protein kinase 8 2.7.11.24 0.658
4o4e ATPKinase / 0.658
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.657
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
5eg3 ACPFibroblast growth factor receptor 2 / 0.657
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.656
4ifc ADPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.656
1cm8 ANPMitogen-activated protein kinase 12 / 0.653
3vjn ANPEpidermal growth factor receptor 2.7.10.1 0.653
3akl ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.652
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
1mru AGSSerine/threonine-protein kinase PknB 2.7.11.1 0.651
1ztf XYARIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.651
3t8o ATPRhodopsin kinase / 0.650