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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ieg FRY Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ieg FRYGlycogen phosphorylase, muscle form 2.4.1.1 0.832
2iei FRXGlycogen phosphorylase, muscle form 2.4.1.1 0.746
1l5r 700Glycogen phosphorylase, liver form 2.4.1.1 0.712
1l5s 700Glycogen phosphorylase, liver form 2.4.1.1 0.712
1em6 CP4Glycogen phosphorylase, liver form 2.4.1.1 0.706
1l5q 700Glycogen phosphorylase, liver form 2.4.1.1 0.700
1exv 700Glycogen phosphorylase, liver form 2.4.1.1 0.689
1xoi 288Glycogen phosphorylase, liver form 2.4.1.1 0.673
1l7x 700Glycogen phosphorylase, liver form 2.4.1.1 0.660