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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2idx ATP Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial 2.5.1.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2idx ATPCob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial 2.5.1.17 1.146
1nhh ANPDNA mismatch repair protein MutL / 0.688
3w2w ATPCRISPR system Cmr subunit Cmr2 / 0.681
3bju ATPLysine--tRNA ligase 6.1.1.6 0.675
1xs4 DCPdCTP deaminase / 0.669
1x09 IPEDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) 2.5.1.31 0.666
3n0z 3ATAdenylate cyclase 2 / 0.657
3orl AGSSerine/threonine protein kinase / 0.657
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.656
4wuc ANPDNA gyrase subunit B / 0.654