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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ido TMP DNA polymerase III subunit epsilon 2.7.7.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ido TMPDNA polymerase III subunit epsilon 2.7.7.7 0.940
2o4g TMPThree-prime repair exonuclease 1 3.1.11.2 0.762
3b6p TMPThree-prime repair exonuclease 1 3.1.11.2 0.704
4prv ADPDNA gyrase subunit B / 0.670
4wud ANPDNA gyrase subunit B / 0.666
4xjc TTPdCTP deaminase / 0.662
3tw6 ADPPyruvate carboxylase / 0.659
4prx ADPDNA gyrase subunit B / 0.655
2d09 FLVBiflaviolin synthase CYP158A2 / 0.654
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.650