Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2id2 | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
2id2 | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 1.361 | |
2euh | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 1.075 | |
1o04 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.903 | |
2qe0 | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 0.894 | |
1uxr | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.880 | |
3b4w | NAD | Aldehyde dehydrogenase family protein | / | 0.863 | |
2ehq | NAP | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.861 | |
2j5n | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.861 | |
1o9j | NAD | Aldehyde dehydrogenase, cytosolic 1 | 1.2.1.3 | 0.857 | |
3efv | NAD | Putative succinate-semialdehyde dehydrogenase | / | 0.856 | |
2ehu | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.855 | |
2eii | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.855 | |
2j6l | NAI | Alpha-aminoadipic semialdehyde dehydrogenase | 1.2.1.31 | 0.849 | |
4gnz | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.844 | |
3rhj | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.842 | |
2bhp | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.840 | |
1qi1 | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 0.836 | |
3rhl | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.835 | |
3v9l | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 | 0.831 | |
3rhq | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.828 | |
3rhr | NDP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.826 | |
2j40 | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.825 | |
4v37 | NAD | Betaine aldehyde dehydrogenase, chloroplastic | 1.2.1.8 | 0.820 | |
1a4z | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.816 | |
4i8q | NAD | Putative betaine aldehyde dehyrogenase | / | 0.814 | |
2eit | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.811 | |
4i8p | NAD | Aminoaldehyde dehydrogenase 1 | / | 0.810 | |
4pz2 | NAD | Aldehyde dehydrogenase 2-6 | / | 0.810 | |
1uxn | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.807 | |
1uxu | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.801 | |
2o2q | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.800 | |
3lns | NAP | NAD(P)-dependent benzaldehyde dehydrogenase | 1.2.1.28 | 0.799 | |
1uxt | NAD | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.792 | |
1uxp | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.791 | |
4oe2 | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.789 | |
4i1w | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.785 | |
4go2 | TAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.783 | |
4ihi | NAD | Probable pyrroline-5-carboxylate dehydrogenase RocA | / | 0.781 | |
4nmk | NAP | Aldehyde dehydrogenase | / | 0.776 | |
4pxn | NAD | Aldehyde dehydrogenase family 7 member B4 | / | 0.773 | |
2jg7 | NAD | Antiquitin | / | 0.771 | |
4a0m | NAD | Betaine aldehyde dehydrogenase, chloroplastic | 1.2.1.8 | 0.770 | |
1t90 | NAD | Malonate-semialdehyde dehydrogenase | 1.2.1.27 | 0.761 | |
4itb | NDP | Succinate-semialdehyde dehydrogenase | / | 0.747 | |
1uxv | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.746 | |
4c3s | NAD | Aldehyde Dehydrogenase | / | 0.741 | |
1bpw | NAD | Betaine aldehyde dehydrogenase | 1.2.1.8 | 0.740 | |
3rho | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.728 | |
3rhh | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.719 | |
3lv1 | NAP | NAD(P)-dependent benzaldehyde dehydrogenase | 1.2.1.28 | 0.718 | |
4i3v | NAD | Aldehyde dehydrogenase (NAD+) | / | 0.717 | |
3rhd | NAP | Lactaldehyde dehydrogenase | 1.2.1.22 | 0.709 | |
2d4e | NAD | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseiheyensis HTE831] | / | 0.706 | |
2y5d | NAP | 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase | / | 0.696 | |
3ju8 | NAD | N-succinylglutamate 5-semialdehyde dehydrogenase | 1.2.1.71 | 0.691 | |
4nmj | NAP | Aldehyde dehydrogenase | / | 0.681 | |
4fr8 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.678 | |
2onm | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.675 | |
1wnb | NAI | Gamma-aminobutyraldehyde dehydrogenase | 1.2.1.19 | 0.667 | |
1eyy | NAP | NADP-dependent fatty aldehyde dehydrogenase | 1.2.1.4 | 0.665 | |
3zqa | NDP | NAD/NADP-dependent betaine aldehyde dehydrogenase | / | 0.665 | |
3haz | NAD | Bifunctional protein PutA | / | 0.660 | |
4zuk | NAD | Alpha-aminoadipic semialdehyde dehydrogenase | 1.2.1.31 | 0.660 | |
1o01 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.659 | |
4h73 | NDP | Aldehyde dehydrogenase | / | 0.659 | |
1o00 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.654 |