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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2icx UTP UTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2icx UTPUTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9 0.948
4m2b UPGUDP-glucose pyrophosphorylase / 0.728
2oeg UPGUDP-glucose pyrophosphorylase / 0.697
4m2a UPGUDP-glucose pyrophosphorylase / 0.684
1jvd UD1UDP-N-acetylhexosamine pyrophosphorylase 2.7.7.23 0.652